Table 2 Cross-validated results showing the performance of the potentials in positioning five targets with experimentally determined tilt angles
From: Membrane protein orientation and refinement using a knowledge-based statistical potential
Protein | PDB | Type | TM Subunits | MP tilt | OPM tilt | TMDET tilt | Ez-3D tilt | Hessa tilt | Experimental tilt |
|---|---|---|---|---|---|---|---|---|---|
Lactose permease | 1 pv6 | Alpha | 1 | 24.9 | 22.1 | 22.7 | 22.1 | 22.2 | 33  |
FhuA | 1qfg | Beta | 1 | 40.0 | 38.8 | 39.2 | - | - | 46  |
OmpA | 1qjp | Beta | 1 | 39.6 | 38.3 | 38.5 | - | - | 44.5  |
KcsA channel | 1r3j | Alpha | 4 | 31.8 | 31.5 | 31.5 | 31.3 | 30.5 | 33  |
Phospholamban | 1zll | Alpha | 5 | 24.9 | 22.5 | 23.8 | 14.0 | 24.4 | 28 ± 6  |