Table 3 Calculated membrane thickness for 12 targets where experimentally determined values are available
From: Membrane protein orientation and refinement using a knowledge-based statistical potential
Protein | PDB | MP thickness | OPM thickness | Experimental thickness |
|---|---|---|---|---|
FepA | 1fep | 23.00 | 24.3 ± 1.1 | ≥23.1  |
Gramicidin A | 1grm | 22.25 | 23.3 ± 4.0 | ~22  |
Rhodopsin | 1gzm | 36.75 | 32.2 ± 1.5 | ~30  |
OmpF | 1hxx | 23.50 | 24.2 ± 0.8 | ~21  |
Calcium AT Pase | 1iwo | 29.50 | 30.8 ± 1.4 | ~27  |
BtuB | 1nqe | 23.50 | 23.4 ± 1.0 | ≥20.2  |
Bacteriorhodopsin | 1py6 | 31.25 | 24.0 ± 8.0 | ~32  |
KcsA channel | 1r3j | 33.50 | 34.8 ± 1.2 | ~34  |
Photosynthetic reaction centre | 1rzh | 31.25 | 31.6 ± 1.4 | ~30  |
Cytochrome c oxidase | 1v55 | 30.00 | 27.8 ± 0.9 | ~27  |
Nodium AT Pase | 1yce | 34.25 | 37.0 ± 0.5 | ≥34.5  |
Mechanosensitive channel | 2oar | 32.25 | 36.4 ± 2.2 | 24  |