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Table 4 The enriched functions of genes in the gene regulatory module 41 at nodulation stage of 24 hours

From: Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data

GO term

Functions

P-value

GO:0042545

P:cell wall modification

7.76836E-07

GO:0009639

P:response to red or far red light

1.46641E-03

GO:0006032

P:chitin catabolic process

7.70352E-05

GO:0042744

P:hydrogen peroxide catabolic process

2.11711E-05

GO:0007047

P:cellular cell wall organization

2.64477E-06

GO:0009739

P:response to gibberellin stimulus

2.07483E-03

GO:0006949

P:syncytium formation

8.69996E-04

GO:0009686

P:gibberellin biosynthetic process

7.38468E-03

GO:0006073

P:cellular glucan metabolic process

3.89541E-02

GO:0009607

P:response to biotic stimulus

1.94115E-03

GO:0009877

P:nodulation

4.04420E-02

GO:0006952

P:defense response

7.89696E-03

GO:0009820

P:alkaloid metabolic process

1.51887E-02

  1. P-value is calculated based on the hypergeometric distribution. The prefix P: biological process; F: molecular function; C: cellular component.