Table 1 Number and percentage of identifiers and names mapped between different resources for cell, gene and protein, and biological process and molecular function concepts
From: A modular framework for biomedical concept recognition
From | To | Solution | # Identifiers | Mapped identifiers | # Concept names | Mapped concept names | |
|---|---|---|---|---|---|---|---|
Gene and protein | Uniprot | Entrez Gene | Neji | 51118 | 100% | 13239 | 100% |
Whatizit | 123136 | 53% | 18079 | 95% | |||
Uniprot | Protein Ontology | Neji | 51118 | 95% | 13239 | 99% | |
Whatizit | 123136 | 22% | 18079 | 78% | |||
Cell | UMLS | Cell Ontology | Neji | 8390 | 64% | 5926 | 91% |
Biological process and molecular function* | UMLS | Gene Ontology | Neji | 6079 | 28% | 5377 | 32% |