From: Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models
Chromosome
Region
Transition matrix
z-value distribution
(c)
(r)
(Null)
(Non-null)
1
0.98 0.02 0.025 0.975
N(0,1)
N( μ 11 ( 1 ) ,1)
2
N( μ 21 ( 1 ) = μ 11 ( 1 ) + υ 2 ,1)
N( μ 11 ( 2 ) = μ 11 ( 1 ) +0.5,1)
N( μ 21 ( 2 ) = μ 11 ( 2 ) + υ 2 ,1)