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Table 6 Results of PLIS and RSPLIS for the known 9 casual SNPs in Daly data, which were reported as significant (Rioux et al., 2001)

From: Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models

SNP name

SNP location

LIS statistics

LIS ranks

 

(th)

RSPLIS

PLIS

RSPLIS

PLIS

IGR2055a-1

25

1.5994e-18

7.5411e-04

5

7

IGR2060a-1

26

1.7388e-18

8.5125e-04

7

9

IGR2063b-1

27

1.7389e-18

8.4605e-04

6

8

IGR2096a-1

33

8.0144e-18

4.1287e-03

39

51

IGR2198a-1

38

1.0731e-17

5.3388e-03

56

79

IGR2230a-1

48

3.4931e-18

2.1243e-03

11

13

IGR3081a-1

73

7.6344e-18

3.9276e-03

37

34

IGR3096a-1

77

3.7265e-18

2.3153e-03

12

14

IGR3236a-1

92

1.3554e-18

5.9574e-04

3

5