DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures

BMC Bioinformatics

Table 1 Different GO term semantic similarity approaches and functional similarity measures implemented in DaGO-Fun

		Functional similarity measures
		Direct term-based				Term semantic-based
	Approaches	SimGIC	SimDIC	SimUIC	SimUI	BMA	ABM	Avg	Max
Annotation-based		x	x	x
	XGraSM					x	x	x	x
	Resnik					x	x	x	x
	Lin					x	x	x	x
	Li et al.					x	x	x	x
	Relevance					x	x	x	x
Topology-based					x
	Zhang et al						x
	Wang et al.						x
	GO-universal					x

The letter 'x’ indicates that the relevant approach is implemented in DaGO-Fun with the corresponding functional similarity measure.

ISSN: 1471-2105