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Table 3 Running the GOSS-FEAT for specific GO Ids and using different GO term semantic similarity approaches

From: DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures

Approach GO-ID GO name Level Reference fuzzy Target fuzzy p-value Corrected
     Frequency Frequency   p-value
GO-Universal GO:0051409 Response to nitrosative stress 3 91 18 0.00e+00 0.00e+00
  GO:0006979 Response to oxidative stress 3 90 18 8.08e-13 5.17e-11
  GO:0052572 Response to host immune response 7 92 8 1.16e-07 7.45e-06
Wang et al. GO:0006979 Response to oxidative stress 3 226 18 0.00e+00 0.00e+00
  GO:0046677 Response to antibiotic 4 164 18 0.00e+00 0.00e+00
  GO:0001666 Response to hypoxia 5 163 18 0.00e+00 0.00e+00
  GO:0006974 Response to DNA damage stimulus 5 419 18 0.00e+00 0.00e+00
  GO:0009432 SOS response 5 316 18 0.00e+00 0.00e+00
  GO:0034605 Cellular response to heat 5 351 18 0.00e+00 0.00e+00
  GO:0071500 Cellular response to nitrosative stress 5 365 18 0.00e+00 0.00e+00
  GO:0075136 Response to host 5 293 12 9.10e-08 5.82e-06
Resnik GO:0009432 SOS response 5 294 18 0.00e+00 0.00e+00
  GO:0034605 Cellular response to heat 5 296 18 0.00e+00 0.00e+00
  GO:0071500 Cellular response to nitrosative stress 5 294 18 0.00e+00 0.00e+00
  GO:0009267 Cellular response to starvation 6 294 18 0.00e+00 0.00e+00
  GO:0071456 Cellular response to hypoxia 7 370 18 0.00e+00 0.00e+00
  GO:0071732 Cellular response to nitric oxide 7 369 18 0.00e+00 0.00e+00
  GO:0006284 Base-excision repair 8 361 18 0.00e+00 0.00e+00
  GO:0006289 Nucleotide-excision repair 8 361 18 0.00e+00 0.00e+00
  GO:0006307 DNA dealkylation involved in DNA repair 9 424 18 0.00e+00 0.00e+00
  GO:0052059 Evasion or tolerance by symbiont of host- 11 319 18 1.63e-12 1.04e-10
   produced reactive oxygen species      
  GO:0052060 Evasion or tolerance by symbiont of host- 11 319 18 1.63e-12 1.04e-10
   produced nitric oxide      
  GO:0051701 Interaction with host 4 35 6 1.05e-07 6.74e-06