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Table 5 Weighted features

From: Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction

 

Binary connections

Weighted connections

Dataset

NHMC

FF

H

NHMC

FF

H

seq

0.011

0.006

0.006

0.021

0.006

0.006

pheno

0.016

0.003

0.002

0.016

0.004

0.004

struc

0.012

0.003

0.002

0.093

0.002

0.003

homo

0.012

0.001

0.002

0.149

0.006

0.006

cellcycle

0.012

0.006

0.006

0.013

0.007

0.006

church

0.012

0.006

0.006

0.012

0.007

0.006

derisi

0.317

0.006

0.006

0.013

0.007

0.006

eisen

0.334

0.006

0.006

0.041

0.006

0.006

gasch1

0.354

0.006

0.006

0.016

0.007

0.006

gasch2

0.012

0.006

0.006

0.016

0.007

0.006

spo

0.012

0.006

0.006

0.016

0.007

0.006

exp

0.012

0.006

0.006

0.015

0.007

0.006

Average:

0.093

0.005

0.005

0.035

0.006

0.006

  1. Binary vs. weighted connections: AUPRC ¯ of NHMC (α = 0.5) with weighted distances in the BioGRID PPI network.