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Table 2 Pink ReMIC genes

From: Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion

KEGG pathways

Pink nodes in Pik3-cluster

Pink nodes in Runx-cluster

 

Significant

Non-significant

Significant

Non-significant

 

p-value

Rank

p-value

Rank

p-value

Rank

p-value

Rank

AM leukemia

0.002(17/294)

26

0.54(10/933)

61

0.01(6/81)

16

0.001(11/265)

3

CM leukemia

2.5E-07(31/294)

2

0.9(9/933)

101

4.5E-06(12/81)

3

0.001(10/265)

9

Pathways in cancer

8.7E-06(67/294)

11

0.54(45/933)

62

1.3E-05(23/81)

4

2.1E-05(34/265)

1

  1. p-values of pathway enrichment for ReMIC genes and non-selected pink nodes which are connected to the red nodes in the
  2. Runx- and Pik3-cluster. Numbers between parentheses show the number of implicated genes in that particular pathway / total
  3. number of genes in the set.
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BMC Bioinformatics

ISSN: 1471-2105

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