From: afterParty: turning raw transcriptomes into permanent resources
Name | In active development | Sequence data type | Interface | Annotations |
---|---|---|---|---|
PartiGene [17] | No | Sanger EST reads | Command-line | BLAST, InterProScan, KEGG, prot4est |
Cbrowse [18] | No | Assembed contigs + read mapping data | Web | None |
BRIGEP [20] | No | Assembled transcripts | Web | BLAST, InterProScan |
TranscriptomeBrowser [21] | Yes | Public microarray data | Java GUI | Existing ontologies |
afterParty | Yes | Roche 454 raw reads or assembled contigs | Web | BLAST, InterProScan |