Table 3 Examination of the original 1P7E structure and two different perturbations of 1P7E, each in two alignment media, before and after refinement with XplorGUI
|  |  |     Before refinement |  |  |     After refinement |  |
|---|---|---|---|---|---|---|
Starting structure | M1 (Hz) | M2 (Hz) | bb-rmsd (Ã…) to 1P7E | M1 (Hz) | M2 (Hz) | bb-rmsd (Ã…) to 1P7E |
1P7E | 1.34176 | 0.98198 | 0.00 | 0.7563 | 0.5417 | 0.75 |
1P7E.PHI | 5.61079 | 3.00242 | 2.18 | 0.7582 | 0.5468 | 1.55 |
1P7E.NAMD | 13.0811 | 7.42607 | 2.15 | 0.7324 | 0.5786 | 1.50 |