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Table 1 Statistics for state classifications

From: A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data

 

Total %

Mean #

Mean

Mean

 

of genome

TA sites

insertion

read

   

density

counts

Essential

16.6

26.9

0.006

0.2

Growth-defect

4.1

29.2

0.20

22.5

Non-essentials

78.0

111.6

0.7

220.5

Growth-advantage

1.3

32.1

0.9

701.1

  1. Statistics for essentials, growth-defect, non-essential and growth-advantage regions. Mean insertion density is defined the proportion of TA sites containing at least one insertion averaged across the regions belonging to a given state. Mean read counts are defined as the mean value of non-empty read counts (i.e. c i > 1), averaged across all regions belonging to the given state.