|
Orf Ids
|
Included genes
|
Insertion density
|
Average reads
|
Average nonzero reads
|
|---|
|
Rv0015c, Rv0016c
|
pknA, pbpA
|
0.21
|
6.7
|
32.3
|
|
Rv0467
|
icl
|
0.23
|
4.0
|
17.6
|
|
Rv2379c
|
mbtF
|
0.23
|
3.2
|
14.0
|
|
Rv2380c, Rv2381c, Rv2382c
|
mbtE, mbtD, mbtC
|
0.29
|
6.4
|
21.7
|
|
Rv3841
|
bfrB
|
0.24
|
4.1
|
17.2
|
|
Rv0126
|
treS
|
0.26
|
6.6
|
25.8
|
|
Rv1097c, Rv1098c, Rv1099c
|
fumC, glpX
|
0.10
|
4.0
|
40.0
|
- Notable Regions labeled as 'growth-defect’ (GD) by the HMM, in which there is a suppression of reads, suggesting an under-representation of transposon insertions in the library. Note that a lower read count is reflected in both a low read count (typically around 10-20, compared to the ∼ 250 average across the whole genome) and a low insertion density (∼ 0.20 compared to 0.54 for the whole genome).
