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Table 5 Rotational angle prediction on the protein chains from Harrington and Ben-Tal’s work

From: Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices

PDB:Chain (MAAE)

TM helix sequence

Observed angle

Predicted angle

Angular error

M ^

PDB:Chain (MAAE)

TM helix sequence

Observed angle

Predicted angle

Angular error

M ^

1BL8:A

HWRAAGAATVLLVIVLLAGSYLAVLA

199.55°

203.38°

3.83°

1.46

2H88:D

VSALLLGLLPAAYLYPG

229.60°

234.10°

4.50°

1.06

(30.86)

WGRCVAVVVMVAGITSFGLVTAALAT

240.88°

298.78°

57.90°

1.87

(27.22)

AVDYSLAAALTLHGHWGL

8.24°

354.67°

13.57°

0.95

1C3W:A

IWLALGTALMGLGTLYFLVKGMG

318.98°

355.18°

36.19°

3.38

 

GLYVLSAITFTGLCYFNYYDV

334.89°

271.30°

63.59°

1.49

(42.28)

KFYAITTLVPAIAFTMYLSMLL

262.69°

313.32°

50.63°

2.74

2OAR:A

VAVVIGTAFTALVTKFTDSIITPLINRIG

319.36°

203.39°

115.96°

0.37

 

WARYADWLFTTPLLLLDLALL

118.84°

44.89°

73.95°

1.60

(113.71)

TIDLNVLLSAAINFFLIAFAVYFL

105.75°

354.30°

111.46°

1.06

 

GTILALVGADGIMIGTGLVGAL

357.99°

332.94°

25.05°

2.80

2QTS:A

VWALCFMGSLALLALVCTNRIQ

285.04°

280.66°

4.38°

2.32

 

RFVWWAISTAAMLYILYVLFFGF

154.03°

169.74°

15.71°

2.25

(11.07)

AGLLGDIGGQMGLFIGASILTVL

41.15°

23.39°

17.76°

2.22

 

FKVLRNVTVVLWSAYPVVWLIG

133.56°

164.23°

30.67°

2.70

2RH1:A

WVVGMGIVMSLIVLAIVFGNVLVITAIA

253.60°

259.99°

6.39°

1.71

 

ETLLFMVLDVSAKVGFGLILLRS

214.98°

278.73°

63.75°

1.93

(35.73)

YFITSLACADLVMGLAVVPFGAAHIL

293.99°

341.90°

47.91°

1.06

1OKC:A

LSFLKDFLAGGVAAAISKTAVAPIER

24.46°

46.33°

21.87°

1.59

 

WCEFWTSIDVLCVTASIETLCVIAV

279.34°

285.10°

5.77°

0.68

(65.78)

NLANVIRYFPTQALNFAFKDKYKQIFL

207.77°

114.64°

93.14°

1.75

 

RVIILMVWIVSGLTSFLPIQMHWYR

88.76°

102.09°

13.33°

1.93

 

WRYFAGNLASGGAAGATSLCFVYPLDFART

112.40°

70.30°

42.09°

1.32

 

FTNQAYAIASSIVSFYVPLVIMVFVYS

158.19°

84.71°

73.47°

1.88

 

YQGFNVSVQGIIIYRAAYFGVYDTAKGMLP

179.94°

59.44°

120.50°

1.40

 

LGIIMGTFTLCWLPFFIVNIVHVIQ

106.50°

159.31°

52.82°

1.40

 

HIIVSWMIAQTVTAVAGLVSYPFDTVRR

264.34°

315.20°

50.85°

0.98

 

IRKEVYILLNWIGYVNSGFNPLIYC

271.42°

321.81°

50.39°

1.50

 

AWSNVLRGMGGAFVLVLYDEI

172.16°

105.90°

66.25°

1.87

2UUH:A

AAVTLLGVLLQAYF

60.17°

77.84°

17.67°

1.38

1ORS:C

VELGVSYAALLSVIVVVVEYTMQL

268.82°

191.51°

77.31°

0.70

(10.47)

SEYFPLFLATLWVAG

96.55°

80.38°

16.17°

0.77

(62.09)

LVRLYLVDLILVIILWADYAY

167.76°

133.29°

34.46°

1.71

 

AALCGLVYLFARLR

191.79°

197.96°

6.17°

2.39

 

KKTLYEIPALVPAGLLALIE

27.58°

321.07°

66.51°

0.72

 

LYASARALWLLVALAAL

116.59°

118.45°

1.86°

2.57

 

LVRLLRFLRILLIISRGSKFLSAIA

233.80°

303.87°

70.07°

0.62

2Z73:A

SLGIFIGICGIIGCGGNGIVIY

276.78°

317.73°

40.94°

3.01

2B6O:A

RAIFAEFFATLFYVFFGLGAS

308.42°

335.32°

26.90°

1.44

(35.30)

FIINLAFSDFTFSLVNGFPLMTI

206.68°

252.82°

46.14°

1.12

(33.01)

LQVALAFGLALATLVQAVGHIS

59.48°

65.56°

6.07°

1.17

 

VYGFIGGIFGFMSIMTMAMISI

303.09°

339.23°

36.14°

0.80

 

LRAICYVVAQLLGAVAGAAVLYSV

354.70°

13.71°

19.01°

2.35

 

FIMIIFVWLWSVLWAIGPIF

99.36°

72.24°

27.11°

2.67

 

GQATIVEIFLTLQFVLCIFATY

61.06°

71.11°

10.05°

1.58

 

NILCMFILGFFGPILIIFFCYF

270.54°

293.89°

23.35°

2.49

 

GSVALAVGFSLTLGHLFGM

342.15°

109.29°

127.14°

1.21

 

SIVIVSQFLLSWSPYAVVAL

127.57°

154.75°

27.18°

2.12

 

WVYWVGPVIGAGLGSLLYDFLL

49.77°

58.65°

8.88°

1.58

 

QLPVMFAKASAIHNPMIYSV

60.63°

106.85°

46.22°

2.01

2BL2:A

VLAMATATIFSGIGSAKGVG

45.15°

105.31°

60.16°

0.99

3B9W:A

YSINILAMLLVGFGFLMV

232.00°

229.10°

2.90°

0.63

(41.83)

LPGTQGLYGFVIAFLIFI

285.84°

259.80°

26.04°

1.70

(33.25)

ATTGTYLVVATGLPLYILL

193.50°

227.23°

33.73°

0.87

 

LGASLPIAFTGLFSGIAQ

82.57°

87.25°

4.68°

1.39

 

IYAEFAVATGLIAMGAVL

221.13°

199.82°

21.31°

0.05

 

MVETYAILGFVISFLLVL

7.10°

290.64°

76.46°

1.13

 

FQYALLALFIVPVYLLNE

11.39°

35.81°

24.42°

1.15

2BS2:C

WQSATGLFLGLFMIGHMFFVST

285.17°

308.25°

23.08°

1.79

 

GSIAIHAFGAYFGLGVSIA

208.92°

309.21°

100.29°

0.73

(51.33)

IVVSFLAAFVFAVFIAHAFLAMR

55.33°

17.57°

37.76°

2.89

 

FSMLGSMVLWLFWPSFA

284.14°

287.41°

3.27°

1.16

 

LWWIQAMTGFAMFFLGSVHLYIMMTQP

188.56°

222.27°

33.71°

1.48

 

VNTLLALCGATLATYFLSAL

36.54°

3.47°

33.07°

1.57

 

WMWPLYLVLLFAVELHGSVGLYRLAV

192.12°

322.45°

130.33°

1.38

 

VDMANAALAGGVAIGSVC

138.00°

55.95°

82.05°

0.24

 

RANLKKLKTLMSAFLIVLGLLTFGAYV

185.58°

153.82°

31.76°

3.30

 

VGAFVIGLLGGAISVVGF

11.05°

21.65°

10.60°

1.90

2H88:C

HRGTGVALSLGVSLFSLAALLLP

123.28°

203.88°

80.60°

1.69

 

TCGVHNLHGLPGLLGGFSAIL

112.57°

156.18°

43.61°

0.92

(45.70)

LIYSAKFALVFPLSYHTWNGIR

307.08°

253.07°

54.01°

0.39

 

LTGIGITLALALIGGVIAGALIKLT

103.20°

92.65°

10.55°

2.58

 

VVVLILTLLSSAAIASE

74.04°

71.55°

2.50°

2.05

      
  1. The columns are protein chain, sequences of transmembrane helices, observed rotational angles from structures, predicted rotational angles by TMexpo, angular errors, and predicted rASA moment lengths ( M ^ ).