Skip to main content

Table 1 MVN-GC, SAGE-tags and NGS-reads models parameters

From: Modeling the next generation sequencing sample processing pipeline for the purposes of classification

Parameters

Value

Feature size D

20000

Training sample

60,120,180

size n

 

Test sample size n t

3000

Class 0 (m0,σ0)

(0.0, 0.6)

Class 1 (m1,σ1)

(1.0, 0.6)

Correlation ρ

0.4, 0.8

Block size l

5

Global markers Dgm

10

Subclasses c

2

Heterogenous

50

markers per

 

subclass Dhm

 

High-variance

2000

non-markers Dhv

 

Low-variance

17890

non-markers Dlv

 

COV

0.05, 0.1

SAGE-tags range

50K-100K

NGS-reads range

1K-50K, 250K-300K, 500K-550K

 

5M-5M+50K, 10M-10M+50K, 15M-15M+50K

 

25M-25M+50K, 32.5M-32.5M+50K, 40M-40M+50K

 

50M-50M+50K, 75M-75M+50K, 100M-100M+50K