Skip to main content

Table 1 MAQC correlations

From: Estimation of data-specific constitutive exons with RNA-Seq data

DAS

qRT-PCR

Union

UI

exClust

Cufflinks

qRT-PCR

1.0000

0.8292

0.8462

0.8651

0.8578

Union

 

1.0000

0.9373

0.9208

0.9322

UI

  

1.0000

0.9868

0.9764

exClust

   

1.0000

0.9777

Cufflinks

    

1.0000

non-DAS

qRT-PCR

Union

UI

exClust

Cufflinks

qRT-PCR

1.0000

0.9435

0.9416

0.9442

0.9360

Union

 

1.0000

0.9917

0.9995

0.9868

UI

  

1.0000

0.9917

0.9806

exClust

   

1.0000

0.9869

Cufflinks

    

1.0000

  1. A table showing two subsets of genes from the MAQC data: differential alternatively spliced genes (DAS) and not differentially alternatively spliced genes (non-DAS). For each set of genes the correlations between Union, UI, exClust and Cufflinks log fold changes are given. The given correlations are only calculated on the subset of genes for which the UI definition is non-empty and have finite log fold change.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us