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Table 1 Benchmark evaluation of PlantTFcat using the PlnTFDB reference database

From: PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool

 

Matches

Conflicts

Missed genes

Newly predicted genes

Arabidopsis thaliana

    

(32,825 gene models)

2,225

333

199

1,744

Zea Mays

    

(147,837 gene models)

4,094

782

370

6,050

  1. The ‘Matches’ column denotes the number of genes that were categorized into the same/synonymous/super/sub families of PlnTFDB by PlantTFcat. The ‘Conflicts’ column denotes the number of genes that were identified by PlantTFcat as TF/TR/CR genes, but with different family annotations than PlnTFDB. The ‘Missed genes’ column represents the genes that were omitted by PlantTFcat but identified as TF/TR genes in the PlnTFDB database. The ‘Newly predicted genes’ column denotes the genes predicted as TF/TR/CR genes by PlantTFcat that were missed by PlnTFDB.