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Table 3 A comparison of SNPs between clonal rainbow trout lines for the combined tissues

From: Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication

 

Arlee

Clearwater

Skamania

Swanson

Whale rock

Arlee

-

2292

1460

1180

1628

Clearwater

(3300)

-

1425

1283

2412

Skamania

(2109)

(2156)

-

792

1486

Swanson

(1722)

(1846)

(1197)

-

1182

Whale Rock

(2359)

(3451)

(2191)

(1716)

-

  1. The number of SNPs with SNP scores of 0.25 or greater using sequences from both embryo and head kidney tissues between the clonal lines of rainbow trout. The alignments, used to identify these SNPs, were produced using Novoalign with default settings (top) and Megablast (bottom in parentheses).
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BMC Bioinformatics

ISSN: 1471-2105

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