Figure 2
From: snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing
Snp-search machinery. Given a genbank and a VCF file, snp-search first creates the SQLite database and populates the data into the database. The user will then have the choice of various output options. Options include producing a SNP concatenated FASTA file, generating a newick-tree format file for phylogenetic analysis and a list of SNPs (depending on query) with information for every SNP (such as if the SNP is synonymous or non-synonymous).