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Table 1 Assignment of individuals included in this study to haplogroups

From: YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data

Pop ID Hapmap1 1KG2 Chip3 NGS4 Pop ID Hapmap1 1KG2 Chip3 NGS4 Pop ID Hapmap1 1KG2 Chip3 NGS4
CHB NA18558 O N N1 N1c1c1 CEU NA06994 HI I1 I1 I1b1 YRI NA18501 E3a E1b1a8a E1b1a E1b1a
CHB NA18561 O O2b O2 O2b CEU NA07357 R R1b1b21 R1b1b2 R1b1b2 YRI NA18504 E3a7 E1b1a E1b1a E1b1a
CHB NA18562 O O O3a O3a3b1 CEU NA10851 R R R1b1b2 R1b1b2 YRI NA18507 E3a7 E1b1a E1b1a E1b1a
CHB NA18563 O O2b O2 O2b CEU NA11829 HI I1 I1 I1b1 YRI NA18516 E3a E1b1a E1b1a E1b1a
CHB NA18572 O O O3a O3a3b1 CEU NA11831 R R R1b1b2 R1b1b2 YRI NA18522 E3a E1b1a E1b1a E1b1a
CHB NA18603 O O O2 O2a1a CEU NA11881 HI I1 I1 I1b1 YRI NA18853 E3a E1b1a8a E1b1a E1b1a
CHB NA18605 O O O O3a3b1 CEU NA11994 R R1b1b21 R1b1b2 R1b1b2 YRI NA18856 E1 E1 E1/E2 E1/E2
CHB NA18608 O N N1 N1c1c CEU NA12003 HI I2b I2b I2b YRI NA18871 E3a E1b1a8a E1b1a E1b1a
CHB NA18609 O O O3a O3a3b1 CEU NA12005 R R1b1b2 R1b1b2 R1b1b2 YRI NA19098 E3a E1b1a E1b1a E1b1a
JPT NA18940 D D2 × D2b1 D2a D2a CEU NA12043 R R1 R1b1b2 R1b1b2 YRI NA19119 E3a E1b1a8a E1b1a E1b1a
JPT NA18943 O O2b O2 O2b CEU NA12144 R R1b1b21 R1b1b2 R1b1b2 YRI NA19138 E3a E1b1a8a E1b1a E1b1a
JPT NA18944 D D2b1 D2a D2a CEU NA12154 R R1 R1b1b2 R1b1b2 YRI NA19141 E3a E1b1a8a E1b1a E1b1a
JPT NA18945 O O O3a O2b CEU NA12155 R R1 R1a1 R1a1c YRI NA19144 E3a E1b1a8a E1b1a E1b1a
JPT NA18948 D D2b1 D2a D2a CEU NA12716 R R1 R1b1b2 R1b1b2 YRI NA19153 E3a E1b1a8a E1b1a E1b1a
JPT NA18952 D D D2a D2a CEU NA12750 HI I1 I1 I1b1 YRI NA19160 E3a E1b1a8a E1b1a E1b1a
JPT NA18953 O O2b O2 O2a CEU NA1760 R R R1b1b2 R1b1b2 YRI NA19171 E3a7 E1b1a E1b1a E1b1a
JPT NA18959 O O O3a O3a3b1 CEU NA12762 R R1 R1b1b2 R1b1b2 YRI NA19200 E3a7 E1b1a E1b1a E1b1a
JPT NA18960 D D2 × D2b1 D2a D2a CEU NA12812 R R1 R1b1b2 R1b1b2 YRI NA19207 E3a E1b1a E1b1a E1b1a
JPT NA18961 D D D2a D2a CEU NA12814 R R1 R1b1b2 R1b1b2 YRI NA19210 E3a7 E1b1a E1b1a E1b1a
JPT NA18965 O O2b O2 O2b CEU NA12872 R R1b1b2g R1b1b2 R1b1b2       
JPT NA18967 D D2b1 D2a D2a CEU NA12874 R R1 R R1b1b2       
JPT NA18970 D D2 × D2b1 D2a D2a             
JPT NA18971 C C1 C1a C3             
JPT NA18974 C C1 C1a C3             
JPT NA19005 O O2b O2 O2b             
  1. *E1b1a was formerly known as E3a.
  2. 1Hapmap indicates results from Hapmap consortium.
  3. 2IKG indicates results form 1000 genomes consortium.
  4. 3Chip indicates results from YHap applied to Hapmap genotype data.
  5. 4NGS indicates results from YHap applied to 1000 genomes consortium sequence data.
  6. The resolution reported for YHap is the level at which a single assignment achieved greater than 90% posterior probability.