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Table 1 Time Comparison of fastprot vs fastprot_mpi

From: Fastphylo: Fast tools for phylogenetics

Tools Nodes Time (minutes)
fastprot 1 1149
fastprot_mpi 8 148
fastprot_mpi 16 76
fastprot_mpi 32 40
fastprot_mpi 64 22
  1. A protein family of 5186 family members was considered for this analysis, and time (rounded to the whole minutes) was recorded for each experiment using the Unix command "time". All experiments were performed on node level at a cluster machine. There were 8 cores in single node of the cluster machine on which the experiments were performed.