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Figure 6 | BMC Bioinformatics

Figure 6

From: Viral quasispecies inference from 454 pyrosequencing

Figure 6

Efficacy of QuasQ the similarity parameter during collapsing. (a) Number of simulated variants of the subtype B HIV-1 pol gene quasispecies detected at different posterior probability threshold (0.7 to 0.95) with similarity threshold held constant at 0.9 (red) and different similarity threshold (0.7 to 0.95) with posterior probability held constant at 0 (blue). (b) Precision, i.e. the proportion of unique simulated variants detected with respect to the total number of constructed haplotypes, of QuasQ at detecting true variants at different similarity threshold.

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