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Table 2 Summary of the eight settings used to simulate the data for comparing the performance of the different sequence alignment approaches

From: Viral quasispecies inference from 454 pyrosequencing

Setting

# quasi-species

Mutation rate

Coverage

A

10

0.02

750

B

15

0.02

750

C

10

0.05

750

D

15

0.05

750

E

10

0.02

1500

F

15

0.02

1500

G

10

0.05

1500

H

15

0.05

1500