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Table 3 Summary of the mean and standard deviation of the total number of constructed haplotypes by QuasQ, ShoRAH, QuRe, ViSpA and ViSpA (with corrected reads) over 50 runs across each of the eight scenarios as described in Table 2

From: Viral quasispecies inference from 454 pyrosequencing

   Mean number of constructed sequences (SD)
Setting Simulated # QuasQ ShoRAH QuRe ViSpA ViSpA (Corrected)
A 10 194.7 (139.5) 267.8 (52.3) 84.5 (21.2) 7,524.0 (297.6) 166.0 (37.5)
B 15 435.0 (207.2) 298.0 (47.8) 103.7 (29.6) 8,257.4 (223.6) 240.5 (48.6)
C 10 189.1 (115.6) 468.0 (122.7) 67.3 (17.8) 8,744.2 (355.1) 409.1 (77.2)
D 15 315.2 (172.8) 671.2 (124.6) 90.0 (18.7) 9,367.3 (434.1) 563.3 (115.8)
E 10 382.8 (186.3) 290.2 (62.7) 128.7 (23.4) 14,721.6 (451.4) 213.1 (48.7)
F 15 506.4 (133.5) 419.6 (97.6) 164.3 (44.7) 16,064.6 (629.5) 344.0 (92.3)
G 10 449.8 (206.9) 786.3 (184.2) 125.4 (29.0) 16,373.3 (1,127.6) 629.5 (111.9)
H 15 534.7 (143.2) 1,155.1 (244.0) 150.7 (34.7) 17,040.8 (2,682.2) 917.8 (207.1)