Skip to main content

Table 6 Summary of the mean and standard deviation of the read lengths from 454 pyrosequencing of serotypes 1, 3 and 4 of the dengue virus obtained from lab cultures in Thailand

From: Viral quasispecies inference from 454 pyrosequencing

Serotype Mean SD QuasQ ShoRAH QuRe ViSpA ViSpA (Corrected) QuasiRecomb (No recomb) QuasiRecomb (With recomb)
1 224.1 52.7 7 203 1 566 2 91 90
3 223.7 51.7 33 205 2 516 4 24 23
4 209.9 61.6 68 145 2 188 3 - -
  1. The last seven columns show the number of constructed haplotypes from QuasQ, ShoRAH, QuRe, ViSpA, ViSpA (with ShoRAH corrected reads), QuasiRecomb (no recombination) and QuasiRecomb (with recombination).
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us