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Figure 1 | BMC Bioinformatics

Figure 1

From: Fragment assignment in the cloud with eXpress-D

Figure 1

Accuracy Comparison for Synthetic Data. Accuracy of eXpress, eXpress-D, RSEM, and Cufflinks at multiple sequencing depths in a simulation of a billion fragments (read pairs) generated with (B) and without (A) sequence-specific bias. Expanded from Figure 2 in [10] and produced using the same synthetic datasets. Each algorithm was presented the same multisized subsets of 1 billion simulated fragments and the Spearman ranked correlation coefficient was calculated between the resulting estimates and ground-truth abundance values used in the simulation. The stars represent where each of the software packages crashed or were halted due to the test machine’s memory constraint (512 GB for all but eXpress-D).

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