Table 2 Number of known RNAs and of predicted novel miRNAs identified with iMir in replicate smallRNA-Seq datasets from MCF-7 cells
Exponentially growing cells | Growth-arrested cells | |||||
|---|---|---|---|---|---|---|
Replicate 1 | Replicate 2 | Replicate 3 | Replicate 1 | Replicate 2 | Replicate 3 | |
miRNA (miRBase v.20) | 473 | 469 | 476 | 461 | 467 | 473 |
tRNA (UCSC Genome Browser) | 56 | 56 | 54 | 45 | 48 | 47 |
rRNA (NCBI Nucleotide) | 4 | 4 | 4 | 4 | 4 | 4 |
mRNA (RefSeq) | 308 | 307 | 307 | 297 | 320 | 325 |
piRNA (NCBI Nucleotide) | 86 | 85 | 84 | 73 | 70 | 67 |
Novel miRNA predicted | 46 | 57 | 55 | 38 | 39 | 42 |