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Table 2 Number of known RNAs and of predicted novel miRNAs identified with iMir in replicate smallRNA-Seq datasets from MCF-7 cells

From: iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq

  Exponentially growing cells Growth-arrested cells
  Replicate 1 Replicate 2 Replicate 3 Replicate 1 Replicate 2 Replicate 3
miRNA (miRBase v.20) 473 469 476 461 467 473
tRNA (UCSC Genome Browser) 56 56 54 45 48 47
rRNA (NCBI Nucleotide) 4 4 4 4 4 4
mRNA (RefSeq) 308 307 307 297 320 325
piRNA (NCBI Nucleotide) 86 85 84 73 70 67
Novel miRNA predicted 46 57 55 38 39 42