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Table 2 Overlap ratios of the top-ranked genes by the rank sum test and nDGE

From: Network-based differential gene expression analysis suggests cell cycle related genes regulated by E2F1 underlie the molecular difference between smoker and non-smoker lung adenocarcinoma

Data set Up-regulated genes    Down-regulated genes   
  Top50* Top100 Top200 Top50 Top100 Top200
Smoker1 0.2 0.19 0.185 0 0 0.065
Smoker2 0 0.01 0.04 0 0 0.035
Smoker3 0 0 0.035 0 0.03 0.025
Smoker4 0 0.02 0.145 0.02 0.03 0.075
Smoker5 0 0.04 0.14 0 0.08 0.16
Smoker6 0.02 0.06 0.1 0 0.01 0.05
  1. *overlap between the top-50 genes prioritized by DGE and nDGE are counted as A, and then overlap ratio is calculated as A/50.