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Table 2 Overlap ratios of the top-ranked genes by the rank sum test and nDGE

From: Network-based differential gene expression analysis suggests cell cycle related genes regulated by E2F1 underlie the molecular difference between smoker and non-smoker lung adenocarcinoma

Data set

Up-regulated genes

  

Down-regulated genes

  
 

Top50*

Top100

Top200

Top50

Top100

Top200

Smoker1

0.2

0.19

0.185

0

0

0.065

Smoker2

0

0.01

0.04

0

0

0.035

Smoker3

0

0

0.035

0

0.03

0.025

Smoker4

0

0.02

0.145

0.02

0.03

0.075

Smoker5

0

0.04

0.14

0

0.08

0.16

Smoker6

0.02

0.06

0.1

0

0.01

0.05

  1. *overlap between the top-50 genes prioritized by DGE and nDGE are counted as A, and then overlap ratio is calculated as A/50.
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BMC Bioinformatics

ISSN: 1471-2105

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