Table 2 Summary of modelled error probabilities and model parameters
From: Sequencing error correction without a reference genome
| Â | Illumina GA lane 2 | Illumina GA lane 4 | Illumina HiSeq lane 2 | ||||||
|---|---|---|---|---|---|---|---|---|---|
Error | Position 1 | A | b | Position 1 | A | b | Position 1 | A | b |
A → C | 1.4E-03 | 1.4E-04 | 0.11 | 8.2E-04 | 2.2E-04 | 0.08 | 2.7E-04 | 3.7E-05 | 0.06 |
A → G | 5.1E-04 | 2.0E-04 | 0.04 | 4.8E-04 | 1.7E-04 | 0.07 | 4.1E-04 | 1.5E-04 | 0.03 |
A → T | 4.1E-04 | 3.4E-05 | 0.15 | 2.1E-04 | 5.8E-05 | 0.12 | 2.0E-04 | 5.6E-05 | 0.03 |
C → A | 2.8E-03 | 4.3E-04 | 0.07 | 7.9E-04 | 3.9E-04 | 0.07 | 6.6E-05 | 6.9E-05 | 0.05 |
C → G | 4.2E-04 | 8.0E-05 | 0.05 | 2.9E-04 | 5.3E-05 | 0.09 | 1.6E-04 | 5.2E-05 | 0.04 |
C → T | 6.3E-04 | 2.1E-04 | 0.07 | 5.9E-04 | 1.9E-04 | 0.08 | 6.2E-04 | 3.1E-04 | -0.01 |
G → A | 4.3E-04 | 1.6E-04 | 0.05 | 3.7E-04 | 2.0E-04 | 0.03 | 6.1E-04 | 4.7E-04 | -0.08 |
G → C | 5.1E-04 | 1.4E-04 | 0.10 | 7.8E-04 | 1.3E-04 | 0.09 | 6.9E-05 | 3.1E-04 | -0.11 |
G → T | 1.5E-03 | 3.5E-04 | 0.10 | 1.0E-03 | 3.3E-04 | 0.08 | 1.2E-03 | 7.7E-04 | -0.13 |
T → A | 3.6E-04 | 7.4E-05 | 0.08 | 2.4E-04 | 1.0E-04 | 0.06 | 1.4E-04 | 5.4E-05 | 0.05 |
T → C | 6.1E-04 | 3.5E-04 | 0.04 | 5.6E-04 | 3.6E-04 | 0.04 | 5.1E-04 | 1.4E-04 | 0.02 |
T → G | 3.3E-04 | 2.8E-04 | 0.05 | 3.4E-04 | 2.7E-04 | 0.08 | 1.3E-04 | 2.0E-05 | 0.15 |