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Table 2 Pairwise genotype count table for two markers

From: A comparison study of succinct data structures for use in GWAS

 

M B

 
  

AA

Aa

aa

NN

C A

M A

AA

1

0

1

0

2

Aa

1

0

0

0

1

aa

0

0

1

0

1

NN

0

1

0

0

1

 

C B

2

1

2

0

 
  1. Note that the marginal sums of this table are the individual markers frequencies from Table 1.