Table 6 Epistasis runtime comparison
From: A comparison study of succinct data structures for use in GWAS
Individuals | 2-bit | 3-bit | Speedup(%) |
|---|---|---|---|
1000 | 28.56 s | 28.45 s | 0.37 |
5000 | 92.07 s | 93.32 s | -1.33 |
10000 | 173.12 s | 177.46 s | -2.45 |
25000 | 418.31 s | 420.71 s | -0.57 |
50000 | 810.71 s | 820.26 s | -1.16 |
150000 | 2408.05 s | 24.27.84 s | -0.81 |