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Table 2 Median value of the per-isoform mapping rate

From: Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching

Alignment method Hom. coverage Inhom. coverage Mod. TSS + polyA
RSEM 0.990 0.990 0.898
STAR 0.943 0.943 0.858
tophat 0.814 0.814 0.737
  1. Using the alignment methods implemented by STAR, tophat, and RSEM, and different types of input material, we compute for each isoform the mapping rate and report the median value for all isoforms.