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Table 2 Median value of the per-isoform mapping rate

From: Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching

Alignment method

Hom. coverage

Inhom. coverage

Mod. TSS + polyA

RSEM

0.990

0.990

0.898

STAR

0.943

0.943

0.858

tophat

0.814

0.814

0.737

  1. Using the alignment methods implemented by STAR, tophat, and RSEM, and different types of input material, we compute for each isoform the mapping rate and report the median value for all isoforms.
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BMC Bioinformatics

ISSN: 1471-2105

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