Alignment and count method | Hom. coverage | Inhom. coverage | Mod. TSS + polyA |
---|---|---|---|
STAR-countOverlaps | 0.892 | 0.892 | 0.892 |
tophat-countOverlaps | 0.893 | 0.893 | 0.893 |
STAR-htseq | 0.877 | 0.877 | 0.877 |
tophat-htseq | 0.883 | 0.883 | 0.883 |
RSEM-count | 0.929 | 0.929 | 0.929 |
RSEM-posteriorCount | 0.930 | 0.930 | 0.930 |