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Table 4 Run time of PPLR and IPPLR

From: puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis

Datasets

PPLR_1000

PPLR_10000

IPPLR

2 replicates

73.1

1330.8

27.5

5 replicates

125.4

3127.4

15.9

  1. The run time (CPU seconds) for 2-replicate dataset is the average processing time over the 5 runs. The number after PPLR indicates the sample number used in the importance sampling of the algorithm. The program runs on the machine with Intel Pentium Dual-core 2.6GHz CPU and 8.0G RAM.
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BMC Bioinformatics

ISSN: 1471-2105

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