Skip to main content

Table 6 SVM-based prediction performances (at the default threshold) of PSSM approach on the different independent datasets

From: Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information

S.No. Prediction Dataset Threshold Sensitivity Specificity Accuracy MCC
1 VIRs V-IND-46 0.8 73.70 71.98 72.07 0.22
0.1 41.74 96.63 93.72 0.38
2 VAIRs VA-IND-15 0.8 73.48 72.87 72.93 0.31
0.0 30.39 97.22 89.77 0.37
3 VBIRs VB-IND-27 0.8 83.05 68.76 69.40 0.23
0.1 49.40 94.49 92.47 0.35
4 PLPIRs PLP-IND-16 0.7 84.15 83.22 83.26 0.33
   0.1 65.85 98.40 97.10 0.63
  1. *Bold value indicates performance at the optimized threshold level of balanced sensitivity and specificity.
  2. **Italic value indicates performance at the optimized threshold level of highest MCC.