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Figure 2 | BMC Bioinformatics

Figure 2

From: Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

Figure 2

Sample of plots obtained using the results of SNPdat. (A) The number of non-synonymous (black) and total number of exonic SNPs (grey) found on each chromosome. (B) Distances of intergenic SNPs, upstream (black) and downstream (grey) to the nearest transcripts. (C) Synonymous versus non-synonymous SNPs: 231 exonic SNPs were non-synonymous. 96 (41.56%) in the first codon position, 103 (44.59%) in the second codon position and 32 (13.85%) in the third codon position. (D) Distances of Intronic SNPs to the nearest exon.

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BMC Bioinformatics

ISSN: 1471-2105

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