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Table 3 The number of SNPs annotated to different regions by SNPdat and Annovar

From: Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

Region SNPdat Annovar
Coding 299 299
3 prime UTR 108 105
5 prime UTR 29 28
Intronic 3285 3284
Intergenic 845 845
Misc. 0 5
Total 4566 4566
  1. Misc features include non-coding RNA and splicing. These features were not included in the GTF version of the ensGene annotation file and so SNPdat was unable to identify them as such.