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Table 2 Precision coverage function estimated after different QC procedures for duplicate- and multi-reads

From: Estimation of CpG coverage in whole methylome next-generation sequencing studies

 

multi

multi

no multi

no multi

 

duplicate

no duplicate

duplicate

no duplicate

# reads/sample

297,405

253,601

217,745

184,853

Mean

−0.0078

−0.0079

−0.0112

−0.0132

Standard deviation

0.0214

0.0217

0.0222

0.0243

Absolute difference

0.0178

0.0181

0.0194

0.0207

  1. Note: # reads/sample is the number of reads around isolated CpGs used as input for our estimation method.