Table 2 Comparative summary of performance in the whole regions of human chromosome 6 of NA18511 and NA10851
From: A computational method for detecting copy number variations using scale-space filtering
Method | NA18511 | NA10851 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detected region (Kbp) | FPR(%) | FNR(%) | Detected region (Kbp) | FPR(%) | FNR(%) | |||||||
Min | Max | Gain | loss | Min | Max | Gain | Loss | |||||
CNV_SS | 1.8(100) | 117(100) | 473 | 438 | 2.12 | 41.08 | 1.3(100) | 142(100) | 361 | 1690 | 2.77 | 17.31 |
CNV_shape | 1.1(85) | 117(98.8) | 13730 | 2515 | 9.39 | 45.32 | 1.1(100) | 142(90.5) | 1020 | 931 | 0.92 | 24.94 |
CNV-seq | 4.1(100) | 117(8.8) | 288 | 63 | 0.13 | 86.29 | 6.2(100) | 142(7.2) | 63 | 288 | 0.04 | 75.17 |
CNV-seq (modified) | 4.1(100) | 117(100) | 602 | 730 | 0.56 | 57.68 | 1.3(100) | 142(55.7) | 538 | 757 | 0.54 | 40.00 |