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Table 2 Comparative summary of performance in the whole regions of human chromosome 6 of NA18511 and NA10851

From: A computational method for detecting copy number variations using scale-space filtering

Method NA18511 NA10851
  Detected region (Kbp) FPR(%) FNR(%) Detected region (Kbp) FPR(%) FNR(%)
  Min Max Gain loss    Min Max Gain Loss   
CNV_SS 1.8(100) 117(100) 473 438 2.12 41.08 1.3(100) 142(100) 361 1690 2.77 17.31
CNV_shape 1.1(85) 117(98.8) 13730 2515 9.39 45.32 1.1(100) 142(90.5) 1020 931 0.92 24.94
CNV-seq 4.1(100) 117(8.8) 288 63 0.13 86.29 6.2(100) 142(7.2) 63 288 0.04 75.17
CNV-seq (modified) 4.1(100) 117(100) 602 730 0.56 57.68 1.3(100) 142(55.7) 538 757 0.54 40.00