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Table 3 Performance comparison of four methods on chromosome 6 sequence data of six individuals at relatively low coverage

From: A computational method for detecting copy number variations using scale-space filtering

Method NA18576 (1.8x) NA18511 (1.8x) NA18570 (2.2x) NA18592 (2.3x) NA18944 (2.3x) NA10851 (5.6x)
  FPR(%) FNR(%) FPR(%) FNR(%) FPR(%) FNR(%) FPR(%) FNR(%) FPR(%) FNR(%) FPR(%) FNR(%)
CNV_SS 2.37 39.89 2.12 41.08 2.36 23.79 3.31 36.77 2.48 37.24 2.77 17.31
CNV_shape 9.25 46.51 9.39 45.32 12.96 44.28 9.38 57.28 17.47 38.72 0.92 24.94
CNV-seq 0.12 68.84 0.13 86.29 0.11 81.99 0.09 80.86 0.10 82.78 0.07 75.17
CNV-seq 0.77 46.36 0.56 57.68 0.52 54.53 0.49 61.03 0.78 46.32 0.54 40.00
(modified)