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Table 3 Performance comparison of four methods on chromosome 6 sequence data of six individuals at relatively low coverage

From: A computational method for detecting copy number variations using scale-space filtering

Method

NA18576 (1.8x)

NA18511 (1.8x)

NA18570 (2.2x)

NA18592 (2.3x)

NA18944 (2.3x)

NA10851 (5.6x)

 

FPR(%)

FNR(%)

FPR(%)

FNR(%)

FPR(%)

FNR(%)

FPR(%)

FNR(%)

FPR(%)

FNR(%)

FPR(%)

FNR(%)

CNV_SS

2.37

39.89

2.12

41.08

2.36

23.79

3.31

36.77

2.48

37.24

2.77

17.31

CNV_shape

9.25

46.51

9.39

45.32

12.96

44.28

9.38

57.28

17.47

38.72

0.92

24.94

CNV-seq

0.12

68.84

0.13

86.29

0.11

81.99

0.09

80.86

0.10

82.78

0.07

75.17

CNV-seq

0.77

46.36

0.56

57.68

0.52

54.53

0.49

61.03

0.78

46.32

0.54

40.00

(modified)