Skip to main content

Table 2 Mean number of SNPs and prognostic SNPs included in the fitted prediction models, recovery rate and means/standard deviations of the log-rank p-values from the test set for the proposed method at ρ = 0 and censoring = 30%

From: Prediction of a time-to-event trait using genome wide SNP data

n

β

Mean number of

Mean number of

Recovery rate

Mean (SD) p-value

  

selected SNP

selected prognostic SNP

 

of the log-rank test

200

0.8

6.72

5.05

0.75

<0.0001 (<0.0001)

 

1

6.13

5.18

0.85

<0.0001 (<0.0001)

 

2

5.60

5.17

0.92

<0.0001 (<0.0001)

300

0.8

6.18

5.53

0.89

<0.0001 (<0.0001)

400

0.8

5.89

5.72

0.97

<0.0001 (<0.0001)