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Table 2 Error ratios of selected GBDP methods

From: Genome sequence-based species delimitation with confidence intervals and improved distance functions

 

Model types

GBDP settings

GLM log

GLM

LM AS

LM

BLAT (d6)

0.045

0.058

0.052

0.052

BLAT (d8)

0.045

0.090

0.097

0.084

BLAST+ (d6)

0.090

0.065

0.071

0.052

BLAST+ (d8)

0.090

0.213

0.187

0.316

BLAST+ (d4)

0.039

0.052

0.052

0.052

  1. Error ratios under different models and the full empirical data set. The here presented GBDP settings are a well-performing selection (see Kendall-related settings for DS1 in Table 1). The models are: linear, LM; linear with arcsine transformation, LM a s ; generalized linear, GLM; GLM with log-transformation, GLM l o g .
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BMC Bioinformatics

ISSN: 1471-2105

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