Table 1 Runtime performance for short read mapping with a single thread on an AMD 2.1 GHz CPU
Runtime (s) | Percentage of time spent | |
|---|---|---|
Indexing | 7.03 | 0.79% |
Seed generation | 120.14 | 13.5% |
Extension | 760.19 | 85.7% |
Runtime (s) | Percentage of time spent | |
|---|---|---|
Indexing | 7.03 | 0.79% |
Seed generation | 120.14 | 13.5% |
Extension | 760.19 | 85.7% |