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Table 7 Runtime performance under different error rate conditions

From: A hybrid short read mapping accelerator

 

76 bp

100 bp

Error

2%

4%

6%

2%

4%

6%

Hybrid aligner

30s

30s

29 s

37 s

38 s

37 s

GASSST

227 s

216 s

199 s

292 s

268 s

253 s

BWA

109 s

150 s

162 s

153 s

214 s

221 s

Speedup1

7.6

7.2

6.8

7.9

7.1

6.8

Speedup2

3.6

5.0

5.6

4.1

5.7

5.9