Table 8 Alignments results for different read lengths and error rate conditions
BWA | GASSST | FPGA | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
2% err | 4% err | 6% err | 2% err | 4% err | 6% err | 2% err | 4% err | 6% err | ||
76 bp | # of aln | 964,053 | 831,634 | 643,670 | 990,842 | 966,001 | 863,848 | 993,057 | 971,367 | 873,804 |
true aln | 950,293 | 819,522 | 634,386 | 976,482 | 951,587 | 851,162 | 977,722 | 956,785 | 861,025 | |
100 bp | # of aln | 964,005 | 835,099 | 655,336 | 990,970 | 976,574 | 905,030 | 993,701 | 988,114 | 944,693 |
true aln | 951,425 | 823,850 | 646,444 | 977,781 | 963,265 | 892,342 | 979,536 | 974,243 | 931,325 | |