Table 9 Alignment performance for 20 million read datasets with 4% error rate
76 bp | 100 bp | |||||
|---|---|---|---|---|---|---|
# of aln | true aln | exe time | # of aln | true aln | exe time | |
Hybrid aligner | 19,424,609 | 19,137,326 | 9 min 54 sec | 19,760,231 | 19,484,102 | 12 min 32 sec |
GASSST | 19,318,463 | 19,034,347 | 67 min 14 sec | 19,524,380 | 19,255,520 | 86 min 16 sec |
BWA | 16,627,675 | 16,387,736 | 50 min 48 sec | 16,687,423 | 16,464,717 | 70 min 57 sec |