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Table 1 Definition and size of the classes

From: Predictability of gene ontology slim-terms from primary structure information in Embryophyta plant proteins

Class

Acronym

Size

Class

Acronym

Size

Molecular Function

  

Biological Process

  

Nucleotide binding

Ntbind

47

Reproduction*

Reprod*

337

Molecular function*

MF*

268

Carbohydrate metabolic process

ChMet

315

DNA binding

DnaBind

107

Generation of precursor metabolites

MetEn

150

Transcription factor activity

TranscFact

307

and energy

  

RNA binding

RnaBind

43

Nucleobase, nucleoside, nucleotide,

NaMet*

712

Catalytic activity*

Catal*

334

nucleic acid metabolic process*

  

Receptor binding

RecBind

38

DNA metabolic process

DnaMet

191

Transporter activity

Transp

125

Translation

Transl

82

Binding*

Bind*

173

Protein modification process

ProtMod

391

Protein binding*

ProtBind*

630

Lipid metabolic process

LipMet

324

Kinase activity

Kinase

68

Transport

Transport

531

Transferase activity*

Transf*

173

Response to stress

StressResp

790

Hydrolase activity

Hydrol

190

Cell cycle

CellCycle

234

Enzyme regulator activity

EnzReg

41

Cell communication*

CellComm*

66

   

Signal transduction

SigTransd

305

   

Cell-cell signaling

Cell-cell

53

Cellular Component

Multicellular organismal development*

MultDev*

490

Cellular component*

CC*

234

Biological process*

BP*

879

Extracellular region

ExtcellReg

109

Metabolic process*

Met*

279

Cell wall

CellWall

77

Cell death

CellDeath

95

Intracellular*

Intracell*

167

Catabolic process

Catabolic

479

Nucleus*

Nucleus*

421

Biosynthetic process*

Biosint*

1125

Nucleoplasm

NuclPlasm

51

Response to external stimulus*

ExtResp*

65

Nucleolus

Nucleolus

84

Tropism

Tropism

36

Cytoplasm*

CitPlasm*

168

Response to biotic stimulus

BioResp

275

Mitochondrion

Mitochond

244

Response to abiotic stimulus

AbioResp

642

Endosome

Endosome

58

Anatomical structure morphogenesis

StrMorph

366

Vacuole

Vacuole

171

Response to endogenous stimulus

EndoResp

332

Peroxisome

Peroxisome

32

Embryonic development

EmbDev

139

Endoplasmatic reticulum

EndRet

109

Post-embryonic development*

PostDev*

375

Golgi apparatus

GolgiApp

100

Pollination

Poll

43

Cytosol

Cytosol

389

Flower development

FlowerDev

228

Ribosome

Ribosome

98

Cellular process*

CP*

1486

Plasma membrane

PlasmMb

353

Response to extracellular stimulus

ExtcellResp

59

Plastid

Plastid

696

Photosyntesis

Photosyn

102

Thylakoid

Thylk

147

Cellular component organization

CellOrg

757

Membrane*

Mb*

472

Cell growth

CellGrowth

133

   

Protein metabolic process*

ProtMet*

187

   

Cellular homeostasis

CellHom

53

   

Secondary metabolic process

SecMet

164

   

Cell differentiation

CellDiff

267

   

Growth*

Growth*

64

   

Regulation of gene expression,

RGE

103

   

epigenetic

  
  1. The list of GO terms covered by this analysis is intended to provide a complete landscape of GO predictability at the three levels of protein functionality in Embryophyta plants. For classification purposes, classes marked with an asterisk (*) were redefined. The number of samples in those categories corresponds to the sequences associated to that class and none of its also listed descendants.