α
|
K
|
Q
| BDE(PS) | BDE() | BDE(SS) | PS-A | PS-M |
|
| SS-A | SS-M |
---|
6.0 | 16.000 | 200 | 6.76 | 4.38 | 4.32 | -58.33 | -59.82 | -58.82 | -57.56 | -59.35 | -56.82 |
8.0 | Â | Â | 2.12 | 1.99 | 1.89 | -58.92 | -59.14 | -58.69 | -59.11 | -58.69 | -58.91 |
9.0 | Â | Â | 2.08 | 1.89 | 1.83 | -59.37 | -59.48 | -58.92 | -59.36 | -59.00 | -59.23 |
10.0 | Â | Â | 2.00 | 1.66 | 1.64 | -60.47 | -59.96 | -59.94 | -59.47 | -59.97 | -59.38 |
11.0 | Â | Â | 2.60 | 2.74 | 2.69 | -58.89 | -59.15 | -58.86 | -59.23 | -58.89 | -59.12 |
12.0 | Â | Â | 1.86 | 1.93 | 2.04 | -59.54 | -58.80 | -59.55 | -58.53 | -59.57 | -58.43 |
13.0 | Â | Â | 2.47 | 2.12 | 2.20 | -58.58 | -59.10 | -58.44 | -59.00 | -58.46 | -58.87 |
- Nuclear SSU rRNA data set. Log Bayes factor estimates for the context-dependent model compared to the site-independent model using regular path sampling (PS; only using the last sample for each path step), path sampling using the mean of a collection of samples from each path step () and regular stepping-stone sampling (SS). Bidirectional checks, consisting of annealing (-A) and melting (-M) integrations, were performed for each log Bayes factor calculation, yielding a bidirectional error (BDE) for each estimator. α values indicate the shape of the sigmoid function used to construct a path between the two models. K indicates the number of path steps (or ratios for SS) used, while Q indicates the number of iterations to be performed per path step (or ratio for SS).