Table 1 List of the AAIndex indices used in this paper
Feature ID | AAIndex ID | Feature description |
|---|---|---|
39 | CHOP780202 | Normalized frequency of beta-sheet (Chou-Fasman, 1978b) |
56 | CIDH920103 | Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992) |
58 | CIDH920105 | Normalized average hydrophobicity scales (Cid et al., 1992) |
86 | FAUJ880109 | Number of hydrogen bond donors (Fauchere et al., 1988) |
88 | FAUJ880111 | Positive charge (Fauchere et al., 1988) |
95 | FINA910104 | Helix termination parameter at posision j+1 (Finkelstein et al., 1991) |
100 | GEIM800104 | Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980) |
102 | GEIM800106 | Beta-strand indices for beta-proteins (Geisow-Roberts, 1980) |
139 | KANM800102 | Average relative probability of beta-sheet (Kanehisa-Tsong, 1980) |
146 | KLEP840101 | Net charge (Klein et al., 1984) |
147 | KRIW710101 | Side chain interaction parameter (Krigbaum-Rubin, 1971) |
167 | LIFS790101 | Conformational preference for all beta-strands (Lifson-Sander, 1979) |
178 | MEEJ800101 | Retention coefficient in HPLC, pH7.4 (Meek, 1980) |
214 | OOBM770102 | Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977) |
229 | PALJ810107 | Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981) |
280 | QIAN880123 | Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988) |
299 | RACS770103 | Side chain orientational preference (Rackovsky-Scheraga, 1977) |
321 | RADA880108 | Mean polarity (Radzicka-Wolfenden, 1988) |
356 | ROSM880102 | Side chain hydropathy, corrected for solvation (Roseman, 1988) |
365 | SWER830101 | Optimal matching hydrophobicity (Sweet-Eisenberg, 1983) |
399 | ZIMJ680102 | Bulkiness (Zimmerman et al., 1968) |
401 | ZIMJ680104 | Isoelectric point (Zimmerman et al., 1968) |
422 | AURR980120 | Normalized positional residue frequency at helix termini C4’ (Aurora-Rose, 1998) |
431 | MUNV940103 | Free energy in beta-strand conformation (Munoz-Serrano, 1994) |
449 | NADH010104 | Hydropathy scale based on self-information values in the two-state model (20% accessibility) (Naderi-Manesh et al., 2001) |
451 | NADH010106 | Hydropathy scale based on self-information values in the two-state model (36% accessibility) (Naderi-Manesh et al., 2001) |
512 | GUYH850105 | Apparent partition energies calculated from Chothia index (Guy, 1985) |
528 | MIYS990104 | Optimized relative partition energies - method C (Miyazawa-Jernigan, 1999) |